PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053086-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 349aa    MW: 39251.1 Da    PI: 5.493
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053086-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.2e-084262346
                      -HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                      +W+ Ia+ ++ gRt++++k++w++
  PSME_00053086-RA  4 RWSQIAANLP-GRTDNEIKNYWNS 26
                      4*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.778132IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-11332IPR009057Homeodomain-like
SuperFamilySSF466894.4E-7336IPR009057Homeodomain-like
PfamPF002491.1E-5426IPR001005SANT/Myb domain
CDDcd001677.00E-6425No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MISRWSQIAA NLPGRTDNEI KNYWNSSMKK KLRLKDHRPS SSTIAANGDT NHDAVTSCHY  60
VQPCLELLVP EEGYHPQNST FNILVSTRDN QLCAEDVLEL KQEQAQNQND EFLVYPNPTN  120
NQRMYSSQLL NNAYSTHTHE SFSTHAAFMS PSLQAQVLHN DNAAKSSTCD ELIIESWRAT  180
VPPHEAPRSA FNYSLGSTGI TIPALVERQP LIKKIENDDH INQNEIMIDH SCFTASSGIS  240
EWGAGHSYSN VAADFTDVYP GIFYTSHDND LFEIRTQEDH AKSHKSYQLS QIEGGKEGHG  300
DQLDRSRISN QEGKAKPVRE CRSRQVAVWA QDDLSNFNTA AASDFFDQM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-13myb domain protein 55